It only took me a few days, but here it is. My latest documentation on using InstallShield Tuner for Lotus Notes with the new Notes 8.5.1. There are a few changes in how Lotus is installed, but it should all make sense.
I've noticed this link is out of date. To access the most up to date information on this, please see this link
It's my slightly updated Lotusphere 2012 slides on how to use InstallShield Tuner for Lotus Notes. Updated for 8.5.3.